| 51 - Adam Loewen, LHP - Baltimore |
| 52 - Craig Hansen, RHP - Boston |
| 53 - Hanley Ramirez, SS - Florida |
| 54 - Mark Rogers, RHP - Milwaukee |
| 55 - Jeff Mathis, C - Anaheim |
| 56 - Dustin McGowan, RHP - Toronto |
| 57 - Scott Elbert, LHP - Los Angeles |
| 58 - Marcus Sanders, 2B - San Francisco |
| 59 - Mike Jacobs, 1B - Florida |
| 60 - Brad Snyder, OF - Cleveland |
| 61 - Homer Bailey, RHP - Cincinnati |
| 62 - Eric Duncan, 1B - NY Yankees |
| 63 - Ryan Braun, 3B - Milwaukee |
| 64 - Brian Anderson, CF - Chicago (AL) |
| 65 - Jonathan Broxton, RHP - Los Angeles |
| 66 - Edison Volquez, RHP - Texas |
| 67 - Jeff Niemann, RHP - Tampa Bay |
| 68 - Elvis Andrus, SS - Atlanta |
| 69 - Gabby Hernandez, RHP - NY Mets |
| 70 - Adam Miller, RHP - Cleveland |
| 71 - Javier Herrera, OF - Oakland |
| 72 - Dustin Nippert, RHP - Arizona |
| 73 - Cliff Pennington, SS - Oakland |
| 74 - Neil Walker, C - Pittsburgh |
| 75 - Cole Hamels, LHP - Philadelphia |
| 76 - Josh Johnson, RHP - Florida |
| 77 - Thomas Diamond, RHP - Texas |
| 78 - Kendry Morales, 1B/DH - Anaheim |
| 79 - Elijah Dukes, OF - Tampa Bay |
| 80 - Jordan Danks, LHP - Texas |
| 81 - Jay Bruce, OF - Cincinnati |
| 82 - Jered Weaver, RHP - Anaheim |
| 83 - Cesar Carrillo, LHP - San Diego |
| 84 - Ricky Romero, LHP - Toronto |
| 85 - Mark Pawelek, RHP - Chicago (NL) |
| 86 - Tom Gorzelanny, LHP - Pittsburgh |
| 87 - Wes Bankston, 1B - Tampa Bay |
| 88 - Chris Volstad, RHP - Florida |
| 89 - Justin Huber, 1B - Kansas City |
| 90 - Glen Perkins, LHP - Minnesota |
| 91 - Hayden Penn, RHP - Baltimore |
| 92 - Nick Adenhart, RHP - Anaheim |
| 93 - Eddie Martinez-Esteve, 1B/DH - San Francisco |
| 94 - Miguel Montero, C - Arizona |
| 95 - Michael Bourn, OF - Philadelphia |
| 96 - George Kottaras, C - San Diego |
| 97 - Josh Barfield, 2B - San Diego |
| 98 - Joey Devine, RHP - Atlanta |
| 99 - Ryan Sweeney, OF - Chicago (AL) |
| 100 - Chris Snelling, OF - Seattle |
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